Recent Work

January 2020:
Raising the Connectome: the emergence of neuronal activity and behavior in C. elegans.bioRxiv, doi:10.1101/2020.01.06.896308.


December 2019:
(with R. Gordon, T. Harbich, U. Singh, A. Singh, and V. Varma) Towards a Digital Diatom: image processing and deep learning analysis of Bacillaria paradoxa dynamic morphology.bioRxiv, doi:10.1101/2019.12.21.885897.


September 2019:
(with R. Gordon and T. Portegys) Data-theoretical Synthesis of the Early Developmental Process. bioRxiv, doi:10.1101/282004.


August 2019:
(with H. Kulkarni) Cultural association based on machine learning for team formation. arXiv, 1908.00234.


October 2018:
(with R. Gordon) Cell Differentiation Processes as Spatial Networks: identifying four-dimensional structure in embryogenesis. BioSystems, 173, 235-246.

(with T.E. Portegys, D. Gordon, and R. Gordon) Morphogenetic processes as data: Quantitative structure in the Drosophila eye imaginal disc . BioSystems 173, 235-246.


September 2018:
(with DevoWorm Group) The Emergent Connectome in Caenorhabditis elegans Embryogenesis. BioSystems, 173, 247-255.

(with 18 co-authors) OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans. Philosophical Transactions of the Royal Society B, 373, 20170382. doi:10.1098/rstb.2017.0382.


August 2018:
(with R. Stone, T.E. Portegys, and G. Mikhailovsky) Origins of the Embryo: Self-organization through cybernetic regulation. BioSystems, 173, 73-82.


April 2018:
(with R. Weber, R. Huskey, and K. Mathiak) Network Dynamics of Attention During a Naturalistic Behavioral Paradigm. Frontiers in Human Neuroscience, doi:10.3389/fnhum.2018.00182.


CV

Education and Research Projects

Selected Publications and Book Chapters

Co-organized Workshops and Conferences

Invited Lectures and Presentations

Figures, Infographics, and Code Releases

Conferences, Slideshows, and Posters

Blog Rolls, Short Papers, and Demos/Tutorials

Popular Press

Teaching History